Package: ELISAtools 0.1.8

ELISAtools: ELISA Data Analysis with Batch Correction

To run data analysis for enzyme-link immunosorbent assays (ELISAs). Either the five- or four-parameter logistic model will be fitted for data of single ELISA. Moreover, the batch effect correction/normalization will be carried out, when there are more than one batches of ELISAs. Feng (2018) <doi:10.1101/483800>.

Authors:Feng Feng [aut, cre]

ELISAtools_0.1.8.tar.gz
ELISAtools_0.1.8.zip(r-4.7-any)ELISAtools_0.1.8.zip(r-4.6-any)ELISAtools_0.1.8.zip(r-4.5-any)
ELISAtools_0.1.8.tgz(r-4.6-any)ELISAtools_0.1.8.tgz(r-4.5-any)
ELISAtools_0.1.8.tar.gz(r-4.7-any)ELISAtools_0.1.8.tar.gz(r-4.6-any)
ELISAtools_0.1.8.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
DESCRIPTION |NEWS
card.svg |card.png
ELISAtools/json (API)

# Install 'ELISAtools' in R:

install.packages('ELISAtools', repos = c('https://ffeng23.r-universe.dev', 'https://cloud.r-project.org'))

On CRAN:

This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.

3.30 score 1 stars 40 scripts 339 downloads 1 mentions 21 exports 3 dependencies

Last updated from:d28128c9c2. Checks:7 WARNING, 2 OK. Indexed: yes.

Target	Result	Time
linux-devel	WARNING	121
source / vignettes	OK	154
linux-release	WARNING	108
macos-release	WARNING	199
macos-oldrel	WARNING	170
windows-devel	WARNING	76
windows-release	WARNING	67
windows-oldrel	WARNING	79
wasm-release	OK	85

Exports:avoidZero combineData elisa_batch elisa_plate elisa_run f5pl inv.f5pl load.ODs loadData loadDB plotAlignData plotBatchData predictAll prepareRegInput rangeOD read.annotations read.plates reportHtml runFit saveDataText saveDB

Dependencies:minpack.lm R2HTML stringi

ELISAtools Package Vignette

Rendered fromelisatools-vignette.Rmdusingknitr::rmarkdown

Last update: 2021-01-21
Started: 2019-03-08

Citation

Readme and manuals

Help Manual

Help page	Topics
ELISA data analysis with batch correction	ELISAtools-package ELISAtools
S3 method to annotate ELISA plate	annotate.plate
Get rid of zeros in a numeric vector	avoidZero
Combine elisa_batch data	combineData
Constructor function to build an elisa_batch object	elisa_batch
S4 class definition of an elisa_batch object	elisa_batch-class
Constructor function to build an elisa_plate object	elisa_plate
S4 class definition of an elisa_plate object	elisa_plate-class
Constructor function to build an elisa_run object	elisa_run
S4 class definition of an elisa_run object	elisa_run-class
The five-parameter logistic function	f5pl
The inverse of the 5-parameter logistic function	inv.f5pl
Function to load OD data	load.ODs load.ODs,elisa_plate-method
Read data according to the design file	loadData
Read the saved elisa_batch data	loadDB
Plot all batch data together	plotAlignData
Plot ELISA data for one batch	plotBatchData
Predict the concentration of samples based on fitting	predictAll
Prepare initial values for fitting shifts	prepareInitsLM
Prepare the input for regressoin	prepareRegInput
Get the OD ranges (min/max)	rangeOD
Read the annotation of single ELISA plate	read.annotation
Read the annotations of plates	read.annotations
Read the single ELISA OD plate	read.plate
Read the ELISA OD files	read.plates
Report ELISA data in HTML format.	reportHtml
Fit 5- or 4-parameter logistic function	runFit
Save elisa_batch analysis results	saveDataText
Save the elisa_batch data	saveDB

Package: ELISAtools 0.1.8

ELISAtools: ELISA Data Analysis with Batch Correction

Citation

Readme and manuals

Help Manual

Usage by other packages (reverse dependencies)